miloR
R package implementation of Milo for testing for differential abundance in KNN graphs (by MarioniLab)
scCODA
A Bayesian model for compositional single-cell data analysis (by theislab)
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| miloR | scCODA | |
|---|---|---|
| 1 | 1 | |
| 305 | 134 | |
| 5.9% | 5.2% | |
| 7.4 | 2.2 | |
| 2 months ago | 12 months ago | |
| HTML | Jupyter Notebook | |
| GNU General Public License v3.0 only | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
miloR
Posts with mentions or reviews of miloR.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-01-05.
scCODA
Posts with mentions or reviews of scCODA.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-01-05.
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Are there any tools to measure changes in cell abundance between two conditions on single cell RNA seq data?
Hope it works for you! scCODA is another tool that does a similar compositions analysis
What are some alternatives?
When comparing miloR and scCODA you can also consider the following projects:
popscle - A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
danbooru-tags - An analysis of tags and metadata on Danbooru