miRPV
An Automated pipeline for miRNA identification and validation (by pradyumnasagar)
mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data (by rajewsky-lab)
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| miRPV | mirdeep2 | |
|---|---|---|
| 1 | 1 | |
| 0 | 130 | |
| - | 4.6% | |
| 0.0 | 2.5 | |
| 5 months ago | 5 months ago | |
| Perl | Perl | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
miRPV
Posts with mentions or reviews of miRPV.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-14.
-
How to create the docker image for my shell script
I have created a workflow for a shell script that installs multiple applications (link to workflow)(link to the modified workflow for dockerfile), I tried to create a docker file (Dockerfile) I don't know where did I go wrong I am not able to create docker image can someone please help.
mirdeep2
Posts with mentions or reviews of mirdeep2.
We have used some of these posts to build our list of alternatives
and similar projects.
-
miRDeep2_core_algorithm.pl error
https://easyupload.io/hxygao
What are some alternatives?
When comparing miRPV and mirdeep2 you can also consider the following projects:
miRPVD
salmon - 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
OTTO - Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
alevin-fry - 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.