jupyterlab-git
jupytext
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jupyterlab-git | jupytext | |
---|---|---|
7 | 20 | |
1,391 | 6,418 | |
2.2% | - | |
7.9 | 8.8 | |
10 days ago | about 1 month ago | |
TypeScript | Python | |
BSD 3-clause "New" or "Revised" License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
jupyterlab-git
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The Jupyter+Git problem is now solved
- GitHub PR code reviews with ReviewNB[4]
Alternatively, if you don't care about cell outputs then Jupytext[5]
Disclaimer: I built ReviewNB. It's a completely bootstrapped business, 5 years in the making and now used by leading DS teams at Meta, AWS, NASA JPL, AirBnB, Lyft, Affirm, AMD, Microsoft & more (https://www.reviewnb.com/#customers)
[1] https://github.com/jupyterlab/jupyterlab-git
I use this plugin for my jupyter notebook git integration. It has a git diff option that's useful but gets very slow for complex documents. Perhaps under the hood it's using one of the other tools mentioned in the postscript.
https://github.com/jupyterlab/jupyterlab-git
- Ask HN: Are there any good Diff tools for Jupyter Notebooks?
- Best extensions for JupyterLab!!
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Git extension for JupyterLab 3 released. Node/build step no longer needed (see updated install instructions). Adds commit & push, file browser context menu integration, Ctrl + enter to commit, "update diff" button and more!
Change log for this release: https://github.com/jupyterlab/jupyterlab-git/releases/tag/v0.30.0
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Recommendations for co-working on Jupyter Notebooks
Also there is an awesome jupyterlab-git extension.
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[D] Official Jupyter survey. How can Jupyter bet fit your workflow?
Official git extension https://github.com/jupyterlab/jupyterlab-git
jupytext
- The Jupyter+Git problem is now solved
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Do you git commit jupyter notebooks?
Jupytext (https://github.com/mwouts/jupytext) has been designed exactly for this
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The hatred towards jupyter notebooks
jupytext is your friend.
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Edit notebooks in Google cloud
So if you run your own jupyter server, -jupy+text can be a great workflow : it takes your notebook synchronized with other formats (python file, makdown, ...), so you can edit your py/md file with neovim, and refresh the browser to execute the notebook.
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Rant: Jupyter notebooks are trash.
Automatically convert ipynb files to py when saving them on JupyterLab
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Two questions regarding working with jupyter notebooks (git, vim)
I don't use Jupyter so I don't know for sure, but on a quick glance you might want to look at https://github.com/mwouts/jupytext to see if that could help at all.
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JupyterLite is a JupyterLab distribution that runs in the browser
The format is only partially invented, it follows Jupytext [0], but adds support for cell metadata. There is no obvious way to get that in fenced codeblocks, especially with the ability to spread it over multiple lines so it plays well with version control.
One more consideration is that it's not "Markdown with code blocks interspersed", one might as well use plaintext or AsciiDoc.
Of course there are tradeoffs.. I wish I had more time to work on it.
[0]: https://github.com/gzuidhof/starboard-notebook/blob/master/d...
[1]: https://github.com/mwouts/jupytext
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Many write research papers in R Markdown - What is the alternative setup in Python?
Using jupytext (allows you to open .md files as notebooks) + jupyter gives you pretty much the same experience. The main issue is that the cell's output will be discarded. To fix it, you can use ploomber to generate an output HTML, so the workflow goes like this:
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Jupyter Notebooks.
First, the format. The ipynb format does not play nicely with git since it stores the cell's source code and output in the same file. But Jupyter has built-in mechanisms to allow other formats to look like notebooks. For example, here's a library that allows you to store notebooks on a postgres database (I know this isn't practical, but it's a great example). To give more practical advice, jupytext allows you to open .py files as notebooks. So you can develop interactively but in the backend, you're storing .py files.
What are some alternatives?
jupyterlab-spreadsheet-editor - JupyterLab spreadsheet editor for tabular data (e.g. csv, tsv)
jupyter - An interface to communicate with Jupyter kernels.
debugger - A visual debugger for Jupyter notebooks, consoles, and source files
rmarkdown - Dynamic Documents for R
JupyterLab - JupyterLab computational environment.
sagemaker-run-notebook - Tools to run Jupyter notebooks as jobs in Amazon SageMaker - ad hoc, on a schedule, or in response to events
nbdime - Tools for diffing and merging of Jupyter notebooks.
nbdev - Create delightful software with Jupyter Notebooks
jupyterlab-desktop - JupyterLab desktop application, based on Electron.
papermill - 📚 Parameterize, execute, and analyze notebooks
qgrid - An interactive grid for sorting, filtering, and editing DataFrames in Jupyter notebooks