ipyleaflet
igv-jupyter
ipyleaflet | igv-jupyter | |
---|---|---|
1 | 1 | |
1,452 | 154 | |
0.3% | 0.0% | |
7.6 | 1.8 | |
11 days ago | over 1 year ago | |
TypeScript | JavaScript | |
MIT License | MIT License |
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ipyleaflet
igv-jupyter
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
igv-notebook and igv-jupyter seem amazing but (unsurprisingly) I could not get them to run anywhere that wasn't a jupyter notebook. I get a kernel error as it tries to initialize itself within streamlit, and I'm not sure how to embed it anywhere else.
What are some alternatives?
jupyterlab-git - A Git extension for JupyterLab
configurable-http-proxy - node-http-proxy plus a REST API
debugger - A visual debugger for Jupyter notebooks, consoles, and source files
tinycov - Command line tool to plot genomic coverage from a BAM file
qgrid - An interactive grid for sorting, filtering, and editing DataFrames in Jupyter notebooks
ipyigv - A Jupyter wrapper for the igv.js library (representation of genomic data)
jupyterlab-variableInspector - Variable Inspector extension for Jupyterlab
pybamview - Browser based application for viewing bam alignments
jupyterlab-toc - Table of Contents extension for JupyterLab
igv-notebook - Module for embedding igv.js in an IPython notebook
jupyterlab-system-monitor - JupyterLab extension to display system metrics
dash-bio - Open-source bioinformatics components for Dash