ideogram
Nullboard
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ideogram | Nullboard | |
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3 | 15 | |
277 | 2,479 | |
- | - | |
9.2 | 5.3 | |
3 months ago | 6 months ago | |
JavaScript | HTML | |
GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ideogram
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New CRISPR-based map ties every human gene to its function
> Where are the polished, powerful design tools for biology
User interfaces for biology have drastically improved over the last 10 years.
Domain-specific tools like genome browsers, protein viewers, or phylogenetic explorers [1-3] almost all look and feel a lot better than they did in 2012.
The biggest exception here is UCSC Genome Browser, which has an old-school design and web technology stack. That said, it's steadily added features over the years, has substantially sleekened UX in its periphery, and remains widely used.
There are also bespoke visual design resources for biology applications that are good and getting better, like BioRender and PhyloPic [4-5]. There are multi-tiered packages like Dash Bio that wrap biology components together. There's Blender biology community, too!
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1. Genome browsers and components: https://jbrowse.org/jb2/, https://www.ncbi.nlm.nih.gov/genome/gdv, https://igv.org/app, https://eweitz.github.io/ideogram
2. Protein viewers: https://pymol.org/, https://nglviewer.org/ngl/
3. Phylogenetic explorers: https://clades.nextstrain.org/
4. https://biorender.com/
5. http://phylopic.org/
6. https://github.com/plotly/dash-bio, https://dash.gallery/Portal/?search=[Pharma]
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Why IndexedDB is slow and what to use instead
I'm more interested in read speeds than write speeds. I have about 2 MB of data that I fetch, then parsed and transformed into a heavily nested object for easy look-up by various types of keys.
In my brief experiment, it was 12% faster to read from the web Cache API, re-parse and re-transform that heavily nested object than to read the fully transformed object via IndexedDB. That surprised me! My understanding is that IndexedDB does a structured clone as part of the read, which I suspect is the main cause of slowness of IndexedDB relative to the Cache API approach in my use case.
Related commits to reproduce that finding are in [1], specifically [2].
[1] https://github.com/eweitz/ideogram/pull/285
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Ask HN: What are some tools / libraries you built yourself?
I created Ideogram.js, a JavaScript library for chromosome visualization [1]. Ideogram supports drawing and animating genome-wide datasets, enabling a variety of genomic views [3].
[1] https://github.com/eweitz/ideogram
[2] https://eweitz.github.io/ideogram
Nullboard
- Ask HN: What apps have you created for your own use?
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Show HN: Nbagent – simple Nullboard backup agent for Unix systems
Hello, HN! I'd like to introduce you to nbagent[0], an open-source alternative backup agent for Nullboard[1] for Unix systems. If you, like me, are a fan of Nullboard's simplicity and you've been looking for an easy way to have your data backed up, check it out.
I'd love to hear your feedback on nbagent. Please feel free to leave comments, suggestions, or questions below.
[0] https://github.com/luismedel/nbagent
[1] https://nullboard.io/preview
- Nullboard: Minimalist Kanban board, focused on compactness and readability
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Kanboard is a free and open source Kanban project management software
Surprisingly no one has mentioned nullboard (https://nullboard.io/preview) yet. Just a single file JSON to carry around the entire board.
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Looking for a Very Simple Kanban
Nullboard maybe?
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Software for organizing board game nights?
minimalist kanban board, without fancy tagging/time tracking/... features. Every game has a column, and notes are player names. nullboard would be perfect if it wasn't local only;
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Phabricator replacement? | Or OpenProject alternative? | issue tracking/code
Nullboard - cool simple project, no bug tracking
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Real hidden gems when it comes to self hosting
Nullboard - Kanban board with dark mode, localStorage, and thoughtful UI
- Ask HN: What are some tools / libraries you built yourself?
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Focalboard – a self-hosted alternative to Trello, Notion, and Asana
I use and like https://nullboard.io/preview nullboard which runs in the browser. Because it uses local data, you need to save it or the data is lost when you close the browser window.
What are some alternatives?
genetic-origins-heatmap - Use your DNA data (e.g. from 23andMe) to paint a global heatmap of your origins.
react-tech-tree - React visual tree components. Demo: https://ldd.github.io/react-tech-tree/
GoJS, a JavaScript Library for HTML Diagrams - JavaScript diagramming library for interactive flowcharts, org charts, design tools, planning tools, visual languages.
Kanboard - Kanban project management software
absurd-sql - sqlite3 in ur indexeddb (hopefully a better backend soon)
sleek - todo.txt manager for Linux, Windows and MacOS, free and open-source (FOSS)
localForage - 💾 Offline storage, improved. Wraps IndexedDB, WebSQL, or localStorage using a simple but powerful API.
logseq - A local-first, non-linear, outliner notebook for organizing and sharing your personal knowledge base. Use it to organize your todo list, to write your journals, or to record your unique life.
rupy - HTTP App. Server and JSON DB - Shared Parallel (Atomic) & Distributed
Wekan - The Open Source kanban (built with Meteor). Keep variable/table/field names camelCase. For translations, only add Pull Request changes to wekan/i18n/en.i18n.json , other translations are done at https://app.transifex.com/wekan/wekan only.
lowdefy - The config web stack for business apps - build internal tools, client portals, web apps, admin panels, dashboards, web sites, and CRUD apps with YAML or JSON.
TiddlyWiki - A self-contained JavaScript wiki for the browser, Node.js, AWS Lambda etc.