grobid
A machine learning software for extracting information from scholarly documents (by kermitt2)
science-parse
Science Parse parses scientific papers (in PDF form) and returns them in structured form. (by allenai)
| grobid | science-parse | |
|---|---|---|
| 11 | 1 | |
| 3,075 | 570 | |
| - | 0.7% | |
| 9.2 | 0.0 | |
| 2 days ago | 9 months ago | |
| Java | Java | |
| Apache License 2.0 | Apache License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
grobid
Posts with mentions or reviews of grobid.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-01-23.
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- Grobid – ML software for extracting information from scholarly documents
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How to create a web app that turns academic papers into text documents
Interesting concept. Grobid tries to do the same https://github.com/kermitt2/grobid
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Extract research paper`s references
I would suggest using grobid - a pipeline for extracting scientific PDFs into a common XML format which can be easily parsed. Grobid has quite a nice mature REST API that I've used in some of my own projects. It parses references and matches them to their DOI using the CrossRef API with a reported 95% F1 score. This should make your job pretty simple as far as I can tell - all you'd need to do is run your papers through grobid and then build a citation graph by comparing document DOIs.
- Free/open-source alternatives to Connected Papers...?
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Seeking Advice: How to extract Abstract from scientific journals (.pdfs) 10k+.
Just use science-parse or GROBID. They have been designed for that exact reason.
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Project to rebuild papers with plaintext markup languages
- I ended up using Grobid, which converts the PDF to a very detailed XML format. The format is not a word processing format though, but a format specifically for representing scientific documents. I don't know, if it would, for example, contain tags about bold or italicized text. The tool is working really well, but since you probably cannot use the output XML format directly, it will need some postprocessing, which would be relatively simple with XML parsing libraries.
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[D] What pdf parser do you use for paragraph parsing for huggingface models
A few years ago I evaluated a few open source tools. In the end focused on GROBID. As usual, it depends on the type of document whether it works well for your use-case. There is some focus on it being "fast" (if that is a concern).
science-parse
Posts with mentions or reviews of science-parse.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-06-03.
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Seeking Advice: How to extract Abstract from scientific journals (.pdfs) 10k+.
Just use science-parse or GROBID. They have been designed for that exact reason.
What are some alternatives?
When comparing grobid and science-parse you can also consider the following projects:
Parsr - Transforms PDF, Documents and Images into Enriched Structured Data
paperai - 📄 🤖 Semantic search and workflows for medical/scientific papers
CERMINE - Content ExtRactor and MINEr
paperetl - 📄 ⚙️ ETL processes for medical and scientific papers
Smile - Statistical Machine Intelligence & Learning Engine
datahub - The Metadata Platform for your Data Stack
Tribuo - Tribuo - A Java machine learning library
Deep Java Library (DJL) - An Engine-Agnostic Deep Learning Framework in Java
s2orc-doc2json - Parsers for scientific papers (PDF2JSON, TEX2JSON, JATS2JSON)
pdfextract
pandoc - Universal markup converter