grobid
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grobid | CERMINE | |
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11 | 1 | |
3,057 | 476 | |
- | 3.2% | |
9.2 | 0.0 | |
3 days ago | almost 2 years ago | |
Java | Java | |
Apache License 2.0 | GNU Affero General Public License v3.0 |
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grobid
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- Grobid – ML software for extracting information from scholarly documents
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How to create a web app that turns academic papers into text documents
Interesting concept. Grobid tries to do the same https://github.com/kermitt2/grobid
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Extract research paper`s references
I would suggest using grobid - a pipeline for extracting scientific PDFs into a common XML format which can be easily parsed. Grobid has quite a nice mature REST API that I've used in some of my own projects. It parses references and matches them to their DOI using the CrossRef API with a reported 95% F1 score. This should make your job pretty simple as far as I can tell - all you'd need to do is run your papers through grobid and then build a citation graph by comparing document DOIs.
- Free/open-source alternatives to Connected Papers...?
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Seeking Advice: How to extract Abstract from scientific journals (.pdfs) 10k+.
Just use science-parse or GROBID. They have been designed for that exact reason.
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Project to rebuild papers with plaintext markup languages
- I ended up using Grobid, which converts the PDF to a very detailed XML format. The format is not a word processing format though, but a format specifically for representing scientific documents. I don't know, if it would, for example, contain tags about bold or italicized text. The tool is working really well, but since you probably cannot use the output XML format directly, it will need some postprocessing, which would be relatively simple with XML parsing libraries.
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[D] What pdf parser do you use for paragraph parsing for huggingface models
A few years ago I evaluated a few open source tools. In the end focused on GROBID. As usual, it depends on the type of document whether it works well for your use-case. There is some focus on it being "fast" (if that is a concern).
CERMINE
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Project to rebuild papers with plaintext markup languages
- Another alternative that's on my list but that I didn't try is Cermine.
What are some alternatives?
Parsr - Transforms PDF, Documents and Images into Enriched Structured Data
pdfextract
Smile - Statistical Machine Intelligence & Learning Engine
Zettlr - Your One-Stop Publication Workbench
science-parse - Science Parse parses scientific papers (in PDF form) and returns them in structured form.
pdffigures2 - Given a scholarly PDF, extract figures, tables, captions, and section titles.
datahub - The Metadata Platform for your Data Stack
OpenPDF - OpenPDF is a free Java library for creating and editing PDF files, with a LGPL and MPL open source license. OpenPDF is based on a fork of iText. We welcome contributions from other developers. Please feel free to submit pull-requests and bugreports to this GitHub repository.
Tribuo - Tribuo - A Java machine learning library
Deep Java Library (DJL) - An Engine-Agnostic Deep Learning Framework in Java
s2orc-doc2json - Parsers for scientific papers (PDF2JSON, TEX2JSON, JATS2JSON)
paperai - 📄 🤖 Semantic search and workflows for medical/scientific papers