gatk4-data-processing
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools (by gatk-workflows)
awscurl
curl-like access to AWS resources with AWS Signature Version 4 request signing. (by okigan)
| gatk4-data-processing | awscurl | |
|---|---|---|
| 1 | 3 | |
| 142 | 716 | |
| 4.9% | - | |
| 0.0 | 6.3 | |
| almost 2 years ago | about 1 month ago | |
| wdl | Python | |
| BSD 3-clause "New" or "Revised" License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gatk4-data-processing
Posts with mentions or reviews of gatk4-data-processing.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-26.
-
Profiling workflows with the Amazon Genomics CLI
To run a workflow with AGC you use commands like the following - in this case I’m running the GATK data processing workflow that is included as an example when you install AGC:
awscurl
Posts with mentions or reviews of awscurl.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-26.
-
Profiling workflows with the Amazon Genomics CLI
Under the hood, agc uses the GA4GH Workflow Execution Schema (WES) to communicate with AWS resources to run workflows. Each AGC context deploys a GA4GH WES endpoint which you can send requests to directly. The endpoint requires AWS SigV4 signed requests, so the easiest way to talk to it is with a tool like awscurl, which does the request signing for you.
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AWS makes one-time donation of $5000 to curl
https://github.com/okigan/awscurl Not by aws though
- Amazon S3 and python requests/curl
What are some alternatives?
When comparing gatk4-data-processing and awscurl you can also consider the following projects:
amazon-genomics-cli
httpie - 🥧 HTTPie CLI — modern, user-friendly command-line HTTP client for the API era. JSON support, colors, sessions, downloads, plugins & more.
jq - Command-line JSON processor [Moved to: https://github.com/jqlang/jq]
cobol-on-wheelchair - Micro web-framework for COBOL
rate.sx - :moneybag: curl cryptocurrencies exchange rates
wttr.in - :partly_sunny: The right way to check the weather
erlcloud - AWS APIs library for Erlang (Amazon EC2, S3, SQS, DDB, ELB and etc)
amazon-genomics-cli-demos - Demos of what can be done with the Amazon Genomics CLI