fmriprep VS abcd-hcp-pipeline

Compare fmriprep vs abcd-hcp-pipeline and see what are their differences.

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results. (by nipreps)
fmri fmri-preprocessing brain-imaging Neuroimaging bids Image processing
Source Code
fmriprep.org
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abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability. (by DCAN-Labs)
bids-format mri-images Pipeline Image processing fmri fmri-preprocessing
Source Code
hub.docker.com
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fmriprep abcd-hcp-pipeline
1 1
607 45
1.8% -
9.5 6.0
5 days ago 4 days ago
HTML Python
Apache License 2.0 BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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fmriprep

Posts with mentions or reviews of fmriprep. We have used some of these posts to build our list of alternatives and similar projects.
  • How to disable RHEL
    1 project | /r/linuxquestions | 24 Dec 2022
    I am trying to download freesurfer to 3D print some scans but my freesurfer license keeps getting denied. I read that someone had the same problem and they had to disable the RHEL (Permission denied: '/opt/freesurfer/license.txt' · Issue #2243 · nipreps/fmriprep · GitHub) but I know very little about programming and cannot understand what they did to fix it.

abcd-hcp-pipeline

Posts with mentions or reviews of abcd-hcp-pipeline. We have used some of these posts to build our list of alternatives and similar projects.
  • Siemens output from ABCD T1 and T2 sequences.
    1 project | /r/neuroscience | 8 Feb 2021
    Who provided the sequence? They're usually the point of contact for this kind of question. Alternatively, you can bug one of the processing groups for ABCD (link, and they might point you in the right direction. A shot of getting one of the ABCD or ABIDE/HCP sequence designers to see this on reddit is unlikley, but good luck.

What are some alternatives?

When comparing fmriprep and abcd-hcp-pipeline you can also consider the following projects:

processing-imageprocessing - Collection of basic image processing algorithms for processing

mara-pipelines - A lightweight opinionated ETL framework, halfway between plain scripts and Apache Airflow

imagetotext.app - Copy text from the raster images online

papermill - 📚 Parameterize, execute, and analyze notebooks

NIPY - Workflows and interfaces for neuroimaging packages

PyFunctional - Python library for creating data pipelines with chain functional programming

Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.

pdpipe - Easy pipelines for pandas DataFrames.

skull-stripping-3D-brain-mri - Apply Skulll Stripping to any 3D Brain MRI images

fmriprep vs processing-imageprocessing abcd-hcp-pipeline vs mara-pipelines fmriprep vs imagetotext.app abcd-hcp-pipeline vs papermill fmriprep vs NIPY abcd-hcp-pipeline vs PyFunctional abcd-hcp-pipeline vs Kedro abcd-hcp-pipeline vs pdpipe abcd-hcp-pipeline vs skull-stripping-3D-brain-mri