biomisc_julia VS seqkit

Compare biomisc_julia vs seqkit and see what are their differences.

biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed (by olgatsiouri1996)
Bioinformatics biojulia Fasta Statistics Pdb Cross-Platform Command Line Tool
Source Code
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seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation (by shenwei356)
Bioinformatics Cross-Platform Fasta Golang Sequence Toolkit fastq Tool Manipulation
Source Code
bioinf.shenwei.me
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biomisc_julia seqkit
1 3
1 1,205
- -
1.8 8.5
almost 2 years ago 5 days ago
Julia Go
MIT License MIT License
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biomisc_julia

Posts with mentions or reviews of biomisc_julia. We have used some of these posts to build our list of alternatives and similar projects.

seqkit

Posts with mentions or reviews of seqkit. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-02-11.
  • A look at the Mojo language for bioinformatics
    9 projects | news.ycombinator.com | 11 Feb 2024
    I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.

    I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:

    - https://github.com/vertgenlab/gonomics

    - https://github.com/biogo/biogo

    - https://github.com/shenwei356/bio

    ... except from there being some really popular bio tools written in Go, like:

    - https://github.com/shenwei356/seqkit

  • Help with understanding awk code
    2 projects | /r/bash | 19 May 2023
    You could also check out tools specialized for FASTA processing like https://github.com/shenwei356/seqkit and https://github.com/lh3/seqtk
  • What are some good examples of well-engineered bioinformatics pipelines?
    8 projects | /r/bioinformatics | 5 Apr 2023
    Seqkit - thoroughly maintained with extensive tutorials and benchmarking info - https://github.com/shenwei356/seqkit

What are some alternatives?

When comparing biomisc_julia and seqkit you can also consider the following projects:

seqtk - Toolkit for processing sequences in FASTA/Q formats

sage - Proteomics search & quantification so fast that it feels like magic

rush - A cross-platform command-line tool for executing jobs in parallel

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

juicer - A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

spades - SPAdes Genome Assembler

fasql - DuckDB Extension for reading and writing FASTA and FASTQ Files

gatk4-genome-processing-pipeline-azure - Workflows used for processing whole genome sequence data + germline variant calling.

seqkit vs seqtk seqkit vs sage seqkit vs rush seqkit vs rnaseq seqkit vs juicer seqkit vs spades seqkit vs fasql seqkit vs gatk4-genome-processing-pipeline-azure