seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation (by shenwei356)
Add to my DEV experience Bioinformatics Cross-Platform Fasta Golang Sequence Toolkit fastq Tool Manipulation
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bioinf.shenwei.me
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Seqkit Alternatives

Similar projects and alternatives to seqkit

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better seqkit alternative or higher similarity.
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seqkit reviews and mentions

Posts with mentions or reviews of seqkit. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-02-11.
  • A look at the Mojo language for bioinformatics
    9 projects | news.ycombinator.com | 11 Feb 2024
    I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.

    I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:

    - https://github.com/vertgenlab/gonomics

    - https://github.com/biogo/biogo

    - https://github.com/shenwei356/bio

    ... except from there being some really popular bio tools written in Go, like:

    - https://github.com/shenwei356/seqkit

  • Help with understanding awk code
    2 projects | /r/bash | 19 May 2023
    You could also check out tools specialized for FASTA processing like https://github.com/shenwei356/seqkit and https://github.com/lh3/seqtk
  • What are some good examples of well-engineered bioinformatics pipelines?
    8 projects | /r/bioinformatics | 5 Apr 2023
    Seqkit - thoroughly maintained with extensive tutorials and benchmarking info - https://github.com/shenwei356/seqkit
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 25 Apr 2024
    Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

Stats

Basic seqkit repo stats
3
1,202
8.5
18 days ago

shenwei356/seqkit is an open source project licensed under MIT License which is an OSI approved license.

The primary programming language of seqkit is Go.

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