awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. (by seandavi)
awesome-nascent-rna-analysis
A collection of tools, pipelines, and guides for performing nascent RNA sequencing analysis (by databio)
| awesome-single-cell | awesome-nascent-rna-analysis | |
|---|---|---|
| 3 | 1 | |
| 2,927 | 6 | |
| - | - | |
| 5.2 | 2.6 | |
| about 2 months ago | about 2 years ago | |
| MIT License | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
awesome-single-cell
Posts with mentions or reviews of awesome-single-cell.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-08-21.
- Staying up to date with processes/technology.
- Ex Python users who switched to 100% R (or almost)
-
Guidance regarding bulk and scRNA seq analysis.
That may be useful: https://github.com/seandavi/awesome-single-cell
awesome-nascent-rna-analysis
Posts with mentions or reviews of awesome-nascent-rna-analysis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-08-21.
What are some alternatives?
When comparing awesome-single-cell and awesome-nascent-rna-analysis you can also consider the following projects:
cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells
MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.
Baltica - Baltica: integrated differential junction usage
Awesome-Bioinformatics - A curated list of awesome Bioinformatics libraries and software.
scDblFinder - Methods for detecting doublets in single-cell sequencing data
DGE_workshop