VirusSeeker-Virome VS RNN-VirSeeker

Compare VirusSeeker-Virome vs RNN-VirSeeker and see what are their differences.

VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin. (by guoyanzhao)
Suggest topics
Source Code
Suggest alternative
Edit details

RNN-VirSeeker

This is a deep learning method for identification of viral contigs with short length from metagenomic data. (by crazyinter)
Suggest topics
Source Code
Suggest alternative
Edit details
InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
VirusSeeker-Virome RNN-VirSeeker
1 1
16 8
- -
10.0 0.0
over 6 years ago over 2 years ago
Perl Python
GNU General Public License v3.0 only -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

VirusSeeker-Virome

Posts with mentions or reviews of VirusSeeker-Virome. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    VirusSeeker: no installation or running instructions on GitHub. They do have it on their lab website, but you have to edit source files to point to databases. Too much of a pain. So not sure how it works once that is done.

RNN-VirSeeker

Posts with mentions or reviews of RNN-VirSeeker. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    RNN-Virseeker: hard coded paths to training and actual data, so source code must be edited for it to be used. Bad practice and unscalable. Also, they don't follow Python conventions. test.py is generally meant to indicate a unit/integration test file for something like pytest, but in their "tool" that is the actual tool's file name.

What are some alternatives?

When comparing VirusSeeker-Virome and RNN-VirSeeker you can also consider the following projects:

virMine

PPR-Meta - A tool for identifying phages and plasmids from metagenomic fragments using deep learning

DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

virnet - VirNet: A deep attention model for viral reads identification

MetaRon - Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

VirusSeeker-Virome vs virMine RNN-VirSeeker vs PPR-Meta VirusSeeker-Virome vs DeePhage RNN-VirSeeker vs virMine VirusSeeker-Virome vs virnet RNN-VirSeeker vs MetaRon VirusSeeker-Virome vs PhaMers RNN-VirSeeker vs DeePhage VirusSeeker-Virome vs PPR-Meta RNN-VirSeeker vs PhaMers VirusSeeker-Virome vs metaGEM RNN-VirSeeker vs metaGEM