Tullio.jl
alphafold2
Tullio.jl | alphafold2 | |
---|---|---|
4 | 1 | |
583 | 1,501 | |
- | - | |
5.2 | 0.0 | |
5 months ago | over 1 year ago | |
Julia | Python | |
MIT License | MIT License |
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Tullio.jl
- A basic introduction to NumPy's einsum
- Generic GPU Kernels
-
Julia: Faster than Fortran, cleaner than Numpy
Julia ships with OpenBLAS, in some cases there are pure-Julia "blas-like" routine that can be as fast:
https://github.com/mcabbott/Tullio.jl
alphafold2
-
A basic introduction to NumPy's einsum
* Example: https://github.com/lucidrains/alphafold2/blob/d59cb1ea536bc5...
What are some alternatives?
Zygote.jl - 21st century AD
array - C++ multidimensional arrays in the spirit of the STL
CUDA.jl - CUDA programming in Julia.
einops - Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)
ForwardDiff.jl - Forward Mode Automatic Differentiation for Julia
einsum - Einstein Summation for Arrays in R
TensorOperations.jl - Julia package for tensor contractions and related operations
slot-attention - Implementation of Slot Attention from GoogleAI
JuliaInterpreter.jl - Interpreter for Julia code
NumPy - The fundamental package for scientific computing with Python.
futhark - :boom::computer::boom: A data-parallel functional programming language
prtm - Deep learning for protein science