NGB
noodles
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
NGB
-
Few words about Java code hygiene
To reproduce the case, let's take a random project from GitHub: NGB, a web genome-viewer tool. To simplify the search for suspicious code fragments, I use the PVS-Studio static analyzer.
-
Alen: Simple terminal-based alignment viewer
A terminal Graphical viewer could be super useful to work directly on ssh remote servers. As Graphical viewer we use [NGB](https://github.com/epam/NGB) or IGV, but they cannot be used directly on servers, you need to get your data locally.
noodles
-
Ask HN: Who is hiring? (February 2024)
St. Jude Children's Research Hospital | Principal/Senior Staff/Staff Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE or REMOTE | https://www.stjude.cloud/
The St. Jude Cloud (https://stjude.cloud) project is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work on the forefront of computational genomics by applying advanced computational techniques to analyzing genomics data then sharing that data with the world. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), as well as many other projects (https://github.com/stjude-rust-labs).
NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. We're just looking for amazing engineers, but rest assured, we teach biology/genomics/bioinformatics from scratch routinely. You must be interested in learning though! If you'd like to get a sense of what you'd be learning, check out the guide we wrote to teach software engineers about genomics here: https://learngenomics.dev.
If you have questions, you can reach out to me (the project lead) with questions at Clay.McLeod AT stjude DOT org.
* Principal: https://talent.stjude.org/careers/jobs/JR1800?lang=en-us
-
Alen: Simple terminal-based alignment viewer
A rust library to parse bam/sam/vcf and all formats used in NGS already exists with noodle.
What are some alternatives?
alen - Simple terminal alignment viewer