NGB
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support (by epam)
alen
Simple terminal alignment viewer (by jakobnissen)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
NGB
Posts with mentions or reviews of NGB.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-07-01.
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Few words about Java code hygiene
To reproduce the case, let's take a random project from GitHub: NGB, a web genome-viewer tool. To simplify the search for suspicious code fragments, I use the PVS-Studio static analyzer.
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Alen: Simple terminal-based alignment viewer
A terminal Graphical viewer could be super useful to work directly on ssh remote servers. As Graphical viewer we use [NGB](https://github.com/epam/NGB) or IGV, but they cannot be used directly on servers, you need to get your data locally.
alen
Posts with mentions or reviews of alen.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-06-09.
- Nicer way to display MSAs
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Alen: Simple terminal-based alignment viewer
I just created Alen, a simple terminal-based (i.e. command-line) tool for viewing protein, DNA or RNA alignments.
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Alen: Simple terminal alignment viewer
I've just written my first real Rust program, Alen. It's an in-terminal biological sequence alignment viewer. To my great surprise, there wasn't really any good command-line alignment viewers out there: The existing alan and alv were poorly implemented and buggy.
What are some alternatives?
When comparing NGB and alen you can also consider the following projects:
noodles - Bioinformatics I/O libraries in Rust
cargo - 📦 GitHub Action for Rust `cargo` command
cross - “Zero setup” cross compilation and “cross testing” of Rust crates
alv - A console-based alignment viewer
rich-msa - A Rich renderable for viewing Multiple Sequence Alignments in the terminal.