ITKElastix vs testbook

ITKElastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images (by InsightSoftwareConsortium)

Itk itk-module

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testbook

🧪 📗 Unit test your Jupyter Notebooks the right way (by nteract)

jupyter-notebook unit-testing Pytest Nteract Python testbook

Source Code

testbook.readthedocs.io

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ITKElastix		testbook
	Project
1	Mentions	2
184	Stars	405
3.3%	Growth	1.5%
8.3	Activity	0.0
25 days ago	Latest Commit	about 1 year ago
TypeScript	Language	Python
Apache License 2.0	License	BSD 3-clause "New" or "Revised" License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

ITKElastix

Posts with mentions or reviews of ITKElastix. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-01-11.

How to raise the quality of scientific Jupyter notebooks
9 projects | dev.to | 11 Jan 2023

In ITK extensions such as ITKIOScanco (a module to work with 3D microtomography volumes) or ITKElastix (a toolbox for rigid and nonrigid registration of images), nbmake runs notebooks in GitHub Actions CI tests.

testbook

Posts with mentions or reviews of testbook. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-01-11.

How to raise the quality of scientific Jupyter notebooks
9 projects | dev.to | 11 Jan 2023

testbook is maintained by the nteract community, and is good for testing functions written inside notebooks
Unit testing Python code in Jupyter notebooks
1 project | dev.to | 22 Mar 2021

The testbook project is a different take on notebook unit testing. It allows you to refer to your notebooks in pure Python code from outside a notebook. This allows you to use any testing framework you like (for example, pytest, or unittest) in separate Python modules. You may have a situation where allowing users to modify and update notebook code is the best way to keep code updated and to allow for flexibility for end users. But you may prefer that the code still be tested and verified separately. Testbook makes this an option.

What are some alternatives?

When comparing ITKElastix and testbook you can also consider the following projects:

ITKIOScanco - ITK Image IO for Scanco MicroCT .ISQ files

pytest-cov - Coverage plugin for pytest.

pytest - The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

best-of-python-dev - 🏆 A ranked list of awesome python developer tools and libraries. Updated weekly.

nbval - A py.test plugin to validate Jupyter notebooks

dirty-equals - Doing dirty (but extremely useful) things with equals.

jupyter-book - Create beautiful, publication-quality books and documents from computational content.

papermill - 📚 Parameterize, execute, and analyze notebooks

nbmake - 📝 Pytest plugin for testing notebooks

pudb - Full-screen console debugger for Python

ITK - Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.