Causal.jl VS Catalyst.jl

Compare Causal.jl vs Catalyst.jl and see what are their differences.

Causal.jl

Causal.jl - A modeling and simulation framework adopting causal modeling approach. (by zekeriyasari)

Catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software. (by SciML)
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Causal.jl Catalyst.jl
2 2
109 421
- 3.6%
0.0 9.5
about 2 years ago 4 days ago
Julia Julia
GNU General Public License v3.0 or later GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

Causal.jl

Posts with mentions or reviews of Causal.jl. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-05-10.
  • ‘Machine Scientists’ Distill the Laws of Physics from Raw Data
    8 projects | news.ycombinator.com | 10 May 2022
    The thing to watch in the space of Simulink/Modelica is https://github.com/SciML/ModelingToolkit.jl . It's an acausal modeling system similar to Modelica (though extended to things like SDEs, PDEs, and nonlinear optimization), and has a standard library (https://github.com/SciML/ModelingToolkitStandardLibrary.jl) similar to the MSL. There's still a lot to do, but it's pretty functional at this point. The two other projects to watch are FunctionalModels.jl (https://github.com/tshort/FunctionalModels.jl, which is the renamed Sims.jl), which is built using ModelingToolkit.jl and puts a more functional interface on it. Then there's Modia.jl (https://github.com/ModiaSim/Modia.jl) which had a complete rewrite not too long ago, and in its new form it's fairly similar to ModelingToolkit.jl and the differences are more in the details. For causal modeling similar to Simulink, there's Causal.jl (https://github.com/zekeriyasari/Causal.jl) which is fairly feature-complete, though I think a lot of people these days are going towards acausal modeling instead so flipping Simulink -> acausal, and in that transition picking up Julia, is what I think is the most likely direction (and given MTK has gotten 40,000 downloads in the last year, I think there's good data backing it up).

    And quick mention to bring it back to the main thread here, the DataDrivenDiffEq symbolic regression API gives back Symbolics.jl/ModelingToolkit.jl objects, meaning that the learned equations can be put directly into the simulation tools or composed with other physical models. We're really trying to marry this process modeling and engineering world with these "newer" AI tools.

  • Should I switch over completely to Julia from Python for numerical analysis/computing?
    5 projects | /r/Julia | 8 Jul 2021
    ModelingToolkit is not equivalent to Simulink. Simulink is a causal modeling framework with a code-based underpinning. The closest to Simulnik would actually be Causal.jl, which is a really nice package in its own right, quite fast, and has a really expansive feature-set. For causal modeling in the form of Simulink, it is definitely a cool package to look into.

Catalyst.jl

Posts with mentions or reviews of Catalyst.jl. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-19.
  • Julia macros
    5 projects | /r/Julia | 19 Dec 2021
  • Should I switch over completely to Julia from Python for numerical analysis/computing?
    5 projects | /r/Julia | 8 Jul 2021
    ModelingToolkit.jl adds a different spin on this by noting what makes a good modeling system isn't top down but a system that allows for bottom up contributions. ModelingToolkit is built on Symbolics.jl which uses OSCAR.jl etc., so every time the symbolics community gets better ModelingToolkit.jl gets better. It connects to the whole SciML ecosystem, so any improvement to any of the SciML interface packages is directly an improvement to ModelingToolkit.jl. ModelingToolkit is made to be a set of composable compiler abstractions called transformations, so anyone can add new packages that do new transformations that improve the ecosystem. One that I really like is MomentClosure.jl which symbolically transforms stochastic ModelingToolkit models (ReactionSystem) to approximate symbolic ODESystem models of the moments. And there's domain-specific langauges like Catalyst.jl being built on the interface to give more ways to build models, which is spawning the biocommunity to make model importers into the symbolic forms, when then feeds more ODE models into the same compiler. JuliaSim is then building on this ecosystem, adding cloud infrastructure that is special-purpose made for doing parallel computations of these models, automatic symbolic model discovery from data, automatic generation of approximate models with machine learning, and tying the Julia Computing compiler team into the web that is building this ecosystem.

What are some alternatives?

When comparing Causal.jl and Catalyst.jl you can also consider the following projects:

casadi - CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

ModelingToolkit.jl - An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations

OMJulia.jl - Julia scripting OpenModelica interface

ParameterizedFunctions.jl - A simple domain-specific language (DSL) for defining differential equations for use in scientific machine learning (SciML) and other applications

ScottishTaxBenefitModel.jl - A tax-benefit model for Scotland

MuladdMacro.jl - This package contains a macro for converting expressions to use muladd calls and fused-multiply-add (FMA) operations for high-performance in the SciML scientific machine learning ecosystem

Modia.jl - Modeling and simulation of multidomain engineering systems

JuMP.jl - Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)

DifferentialEquations.jl - Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.

MomentClosure.jl - Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

ModelingToolkitStandardLibrary.jl - A standard library of components to model the world and beyond

ReservoirComputing.jl - Reservoir computing utilities for scientific machine learning (SciML)