Catalyst.jl VS Unityper.jl

Compare Catalyst.jl vs Unityper.jl and see what are their differences.

Catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software. (by SciML)
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Catalyst.jl Unityper.jl
2 2
422 51
1.4% -
9.5 5.5
6 days ago 5 months ago
Julia Julia
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

Catalyst.jl

Posts with mentions or reviews of Catalyst.jl. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-19.
  • Julia macros
    5 projects | /r/Julia | 19 Dec 2021
  • Should I switch over completely to Julia from Python for numerical analysis/computing?
    5 projects | /r/Julia | 8 Jul 2021
    ModelingToolkit.jl adds a different spin on this by noting what makes a good modeling system isn't top down but a system that allows for bottom up contributions. ModelingToolkit is built on Symbolics.jl which uses OSCAR.jl etc., so every time the symbolics community gets better ModelingToolkit.jl gets better. It connects to the whole SciML ecosystem, so any improvement to any of the SciML interface packages is directly an improvement to ModelingToolkit.jl. ModelingToolkit is made to be a set of composable compiler abstractions called transformations, so anyone can add new packages that do new transformations that improve the ecosystem. One that I really like is MomentClosure.jl which symbolically transforms stochastic ModelingToolkit models (ReactionSystem) to approximate symbolic ODESystem models of the moments. And there's domain-specific langauges like Catalyst.jl being built on the interface to give more ways to build models, which is spawning the biocommunity to make model importers into the symbolic forms, when then feeds more ODE models into the same compiler. JuliaSim is then building on this ecosystem, adding cloud infrastructure that is special-purpose made for doing parallel computations of these models, automatic symbolic model discovery from data, automatic generation of approximate models with machine learning, and tying the Julia Computing compiler team into the web that is building this ecosystem.

Unityper.jl

Posts with mentions or reviews of Unityper.jl. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-03.
  • JuLox: What I Learned Building a Lox Interpreter in Julia
    3 projects | news.ycombinator.com | 3 Jun 2023
    I'm pretty sure it is type instability. The faster way to do this would be with something like https://github.com/YingboMa/Unityper.jl which would fix that. The problem with profiling unstable code in Julia is that it makes everything slow so the profiler will just show a big mess of everything being slow. We do need better resources, but I have no idea what they would like like.
  • Julia macros
    5 projects | /r/Julia | 19 Dec 2021

What are some alternatives?

When comparing Catalyst.jl and Unityper.jl you can also consider the following projects:

ModelingToolkit.jl - An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations

MuladdMacro.jl - This package contains a macro for converting expressions to use muladd calls and fused-multiply-add (FMA) operations for high-performance in the SciML scientific machine learning ecosystem

ParameterizedFunctions.jl - A simple domain-specific language (DSL) for defining differential equations for use in scientific machine learning (SciML) and other applications

JuMP.jl - Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)

Moose - 🐐 A new fun programming language

Causal.jl - Causal.jl - A modeling and simulation framework adopting causal modeling approach.

MomentClosure.jl - Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

ReservoirComputing.jl - Reservoir computing utilities for scientific machine learning (SciML)

casadi - CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

SymbolicNumericIntegration.jl - SymbolicNumericIntegration.jl: Symbolic-Numerics for Solving Integrals