Perl-for-reysenbach-lab Alternatives

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hyperfine

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dotfiles

4 1 7.9 Shell perl-for-reysenbach-lab VS dotfiles

is it worth the time? (by eh8)
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faster-perl-for-reysenbach

1 0 3.9 Perl perl-for-reysenbach-lab VS faster-perl-for-reysenbach

Tracks the progress of making old Perl scripts faster and more maintainable. Working from Meneghin's perl-for-reysenbach-lab repository of bioinformatics scripts.
python-bioinformatics

1 0 0.0 Python perl-for-reysenbach-lab VS python-bioinformatics

Here are five of my bioinformatics scripts that have been converted from Perl to Python... Also a script for creating histograms of GC content.

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perl-for-reysenbach-lab reviews and mentions

Posts with mentions or reviews of perl-for-reysenbach-lab. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-03-15.

Faster tetranucleotide (k-mer) frequencies!
4 projects | dev.to | 15 Mar 2024

I saw Jennifer's post about re-writing her perl scripts in python and how she saw a 2.5 times improvement.
Calculating tetranucleotide (k-mer) frequencies
2 projects | dev.to | 1 Sep 2022

In 2016 I wrote a Perl script for the Reysenbach lab that calculates k-mer frequencies, for all k-mers in a given sequence. It was made public soon after, and you can find get_kmer_frequencies.pl on my Github page.
Get GC Content
1 project | dev.to | 24 Aug 2022

I wrote a Perl script that calculates GC content for all the sequences in a fasta file back in 2010 for the Reysenbach Lab, and it was made publicly available soon after. You can find get_gc_content.pl on GitHub (https://github.com/jmeneghin/perl-for-reysenbach-lab)
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