conduit

CONDUIT - CONsensus Decomposition Utility In Transcriptome-assembly (by NatPRoach)

conduit reviews and mentions

Posts with mentions or reviews of conduit. We have used some of these posts to build our list of alternatives and similar projects.
  • Hyped abou Nim - Use in Bioinformatics
    1 project | /r/nim | 23 Feb 2021
    Yes I was also going to recommend checking out https://github.com/brentp 's work. He's written a number of tools in nim at this point and they are all pretty well written. I'm not sure how you're planning on doing the genome assembly (De Bruijn graph, etc), but you may want to checkout my de novo transcriptome assembler https://github.com/NatPRoach/conduit which uses partial order graphs to generate splice graphs. It's a bit messy and can definitely use some work, but hopefully useful to you as you look into working with nim.

Stats

Basic conduit repo stats
1
6
0.0
over 2 years ago

NatPRoach/conduit is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

The primary programming language of conduit is Nim.


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