CheckM2

Assessing the quality of metagenome-derived genome bins using machine learning (by chklovski)
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CheckM2 reviews and mentions

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  • PhyloPhlAn 3 for MAGs?
    1 project | /r/bioinformatics | 12 Oct 2022
    Classify, meaning assign taxonomies? CheckM is a good first pass (make sure to use v2), then GTDB-Tk. PhyloPhlAn will work on MAGs, but my understanding is that it is generally implemented on reads

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5.2
6 months ago

chklovski/CheckM2 is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.

The primary programming language of CheckM2 is Scilab.


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