Nextflow vs Snakemake

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • WorkOS - The modern identity platform for B2B SaaS
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  • adoptium

  • Internal library management. NF can be installed without any external package manager, and it downloads and installs all the needed plugins and libraries only when they are used for the first time, saving time and disk space. JVM can be set up very easily, even without root access (just download and extract the zip from adoptium.net, and it's done).

  • nextflow

    A DSL for data-driven computational pipelines

  • We could spend the day pointing to things we wish were different, but that doesn't change the fact that Nextflow is the leader when it comes to workflow orchestration. And feel free to create a new issue in the GitHub repository if you wish to request a feature :)

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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