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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
I can't find any tool to do this, but if you can program yourself then I recommend taking a look at Apache PDFBox. You can set the MediaBox on the individual PDPage objects inside the PDF. In theory, if you want or need to, you could check which shapes fall outside the MediaBox and delete them.
NOTE:
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