Why can’t variant calling from whole human genome be a trivial workflow on a cloud?

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • gatk4-germline-snps-indels

    Workflows for germline short variant discovery with GATK4

    • Broad has wdl pipeline for variant calling at https://github.com/gatk-workflows/gatk4-germline-snps-indels

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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