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And yes, at least my setup fulfills all of your requirements and much more. For starters, I can add tags, date- and timestamps everywhere, generate "agenda" views for days/weeks/months/... which collects all those time-related items and visualizes them, I can link emails/urls/... and links to files which I tag as well, I can search through search strings or regex to find meta-data on files/notes/events/... and it's all in the most versatile file format possible: plain UTF-8 text files containing simple orgdown syntax, the most beautifully designed lightweight markup language (LML) there is IMHO.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
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If you want to spare a couple of detours, you probably could start with Emacs Org-mode according to Greenspun's eleventh rule: "Any sufficiently complicated PIM or note-taking program contains an ad hoc, informally specified, bug-ridden, slow implementation of half of Org mode."
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github-orgmode-tests
This is a test project where you can explore how github interprets Org-mode files
If you want to spare a couple of detours, you probably could start with Emacs Org-mode according to Greenspun's eleventh rule: "Any sufficiently complicated PIM or note-taking program contains an ad hoc, informally specified, bug-ridden, slow implementation of half of Org mode."
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Org Mode