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It seems to me they made the same mistake that I did in my GitHub archive queries, they do not filter bot accounts. JavaScript, without filter, is on top 1 because of dependabot. If you filter all bots then Python is number 1, see: https://madnight.github.io/githut/#/pull_requests/2023/1
This heavily carried by the main package repository (nixpkgs) development happening on GitHub. This isn't to say that Nix isn't popular, though. Anecdotally, I consume alot of software that makes use of Nix.
https://github.com/NixOS/nixpkgs
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.