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Deduping first will save you a lot of time but detecting duplicate files is a bit complicated if they are from different sources so the names and even encoding (i.e. checksum) don't match - there are some tools for 'playing' both files and seeing if the content is the same https://github.com/clee704/audiodiff
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Cloudways
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m4b-tool
m4b-tool is a command line utility to merge, split and chapterize audiobook files such as mp3, ogg, flac, m4a or m4b
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tone
tone is a cross platform audio tagger and metadata editor to dump and modify metadata for a wide variety of formats, including mp3, m4b, flac and more. It has no dependencies and can be downloaded as single binary for Windows, macOS, Linux and other common platforms.
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