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Both Nanoloop and LSDJ are closed source unfortunately. But ArduinoBoy is open, so maybe you can get from its "what to sent" to your "what to receive"?
But I guess analog sync would be way simpler. Did not test if this is 100% compatible to nanoloop's analog sync, but again: I found a source for the arduino-side of things: https://github.com/mackemint/GBAnalogSynch
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