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You may be interested in something like https://github.com/astro/skyflake too. I have not tried it personally but I think the microvm route has potential.
I am using https://github.com/terranix/terranix to handle terraform. My workflow involves building a JSON configuration using it and then invoking terraform like usual. One side effect is that I can have a mix of nix and HCL if I want (my main use case for this is incremental rewrites).
For nomad jobs there is https://github.com/tristanpemble/nix-nomad
For applications, I think environment variables are great. Especially if you adopt nomad because you could also use vault to populate secrets in. For machines that won't work so you'll need something else like https://github.com/Mic92/sops-nix