Build de novo transcriptome by trinity

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • PASApipeline

    PASA software

    • Of course I could do a genome-guided assembly, where bam files are the input file and I can use reads mapped on viral genome. However, this approach is different from the PASA documentation, where it asks 2 files (genome guided and de novo) https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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