synthea
fhir
synthea | fhir | |
---|---|---|
8 | 9 | |
2,002 | 512 | |
1.4% | 1.4% | |
8.2 | 9.6 | |
6 days ago | 7 days ago | |
Java | HTML | |
Apache License 2.0 | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
synthea
- Survey on Synthea Use to Shape the Future of Open Source Medical Records
- Synthea: Open-Source Synthetic Patient Generation
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Simulated Hospital
As someone working in this arena, I offer an alternative perspective for your consideration: healthcare was an early adopter of information technology and as a result many of its most core technologies come from a nearly unrecognizable time in computing. These systems are “outdated” as a result of success.
The current prevalence of these venerable technologies may be in part due to regulation, but more often has to do with their success.
HL7v2 is just token delimited ascii. Not unlike the similarly primitive but ubiquitous csv. The fields within it are defined by standards documents and once you use it a little, you can read enough to get the gist of most messages. As you might guess, modules in your language of choice are used to parse and compose HL7v2 so its detail isn’t that important.
Something I’d like to point out about Google Hospital is that under the hood it uses MITRE’s Synthea to generate synthetic patient data.
https://www.healthcareittoday.com/2017/09/13/open-source-too...
https://synthetichealth.github.io/synthea/
- Looking for Mock Hospital Dataset. Financial, Human Resource, Departments, In/Out Patients Data.
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Will pay for realistic large dataset of HL7 messages
Have you tried Synthea? https://github.com/synthetichealth/synthea
- Healthcare datasets with multiple continuous variables
- I'm being threatened to be sued by my college for copyright infringement
fhir
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AWS Step Functions Callback Pattern
I skipped over the prepare change function that is at the beginning of the sub-map flow because it's outside of the scope of this article. But when you choose AWS HealthLake you are signing up for a FHIR compliant datastore. FHIR stands for Fast Healthcare Interoperable Resource and it's the go-to and preferred format for exchanging Patient and other Healthcare data between domain boundaries externally. The prepare function breaks the NDJSON up and makes little FHIR payloads to be sent downstream into the ecosystem.
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Salary transparency thread
For someone breaking into the industry, I would recommend starting here: https://hl7.org/fhir/ This is the future of data interoperability in healthcare. And if you understand this and how it works and get certified in it, you should be able to write your own ticket. If you can combine that with API development chops, you are golden. One thing I'll note is that healthcare data is its own unique animal but the items you see on that page look very similar to how healthcare data is organized in major systems.
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Issue with ordering JSON keys when marshalling an ordered map
In this case, it appears that the source data are FHIR resources where a resourceType field canonically comes first (though is not required by the spec to do so I believe).
- Helseplattformen har valgt et system som er utviklet for et annet helsevesen og som det er logiske problemer med å få til å fungere hos oss
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Anyone else work with health databases or HL7v2 everyday, but still a bit bamboozled by the concept of FHIR?
The docs are very helpful: https://hl7.org/fhir/
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XPathNodeIterator not Iterating/Having Trouble with Returning Attributes
XPathDocument docNav; XPathNavigator nav; XPathNodeIterator nodeIter; string strExpression1; docNav = new XPathDocument(@"..\..\..\patient-example.xml"); nav = docNav.CreateNavigator(); XmlNamespaceManager namespaceManager = new XmlNamespaceManager(nav.NameTable); namespaceManager.AddNamespace("fhir", "http://hl7.org/fhir"); strExpression1 = "/Patient/telecom"; nodeIter = nav.Select(strExpression1, namespaceManager)); Console.WriteLine($"The XPath {strExpression1} expression yields the following phone numbers: "); while (nodeIter.MoveNext()) { XPathNodeIterator childIter = nodeIter.Current.SelectChildren("value", ""); Console.WriteLine($"Attribute: {childIter.Current.GetAttribute("value", "")}"); };
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Who owns the copyright to my medical images?
I want to point out that in the United States, patients have access to their health data via API using open standards that are free and accessible for developers.
This is now.
There is a huge lack of applications that make use of these APIs and the opportunities to improve patient's managing their own health are enormous.
You can start here:
http://hl7.org/fhir/
(and maybe click on Resources to get an idea of what this is all about).
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Need Medical Knowledge Graph
Have you heard about FHIR? http://hl7.org/fhir/ It's expressed in Turtle (among other formats). Not specifically for mental disorder, but it might help.
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Billing API for Medicaid and Tricare
Here is the implementation if you want to give it a go: https://github.com/HL7/fhir
What are some alternatives?
simhospital
invesalius3 - 3D medical imaging reconstruction software
FHIR-Converter - Conversion utility to translate legacy data formats into FHIR
healthlake-export-manager - Sample and working repos to demonstrate exporting data from AWS HealthLake to trigger downstream operations
clojure-hl7-messaging-2-parser - HL7 v2.x Messaging Parser
Zato - ESB, SOA, REST, APIs and Cloud Integrations in Python
data-analysis
umls2rdf - These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
JSL - The JSL is an open-source discrete event simulation library written in Java
cogat - Cognitive Atlas
log-synth - Generates more or less realistic log data for testing simple aggregation queries.
mars-sim - Mars Simulation Project Official Codebase