supranim
WIP ⚡️ Just a bloody hyper server & framework written in Nim language 👑 (by supranim)
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing (by brentp)
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The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
supranim
Posts with mentions or reviews of supranim.
We have used some of these posts to build our list of alternatives
and similar projects.
mosdepth
Posts with mentions or reviews of mosdepth.
We have used some of these posts to build our list of alternatives
and similar projects.
- Calculating Average Coverage or Read Depth for a Sequence (WES)
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Why is bedtools genomecov giving me a blank output file?
I'm not sure why that happens, but an alternative to bedtools genomecov is mosdepth. Maybe you can try that tool instead as it's very reliable.
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Is there a tool that quantifies “spatial coverage”, that is what percentage of a reference assembly has a read mapped to it?
I would give mosdepth a look. It can provide depth across a chromosome/contig at each base, or a mean depth for a given window size (eg 1kb), or regions provided within a bed file, or a simple summary of the mean depth across each chromosome/contig.
What are some alternatives?
When comparing supranim and mosdepth you can also consider the following projects:
prologue-examples - A repository to host examples for Prologue framework written in Nim language.
nimbus-eth1 - Nimbus: an Ethereum Execution Client for Resource-Restricted Devices