biomisc_julia
collection of miscellaneous command line bioinformatic scripts written in julia for speed (by olgatsiouri1996)
BioSequences.jl
Biological sequences for the julia language (by BioJulia)
| biomisc_julia | BioSequences.jl | |
|---|---|---|
| 1 | 3 | |
| 1 | 146 | |
| - | 0.7% | |
| 1.8 | 6.1 | |
| almost 2 years ago | about 1 month ago | |
| Julia | Julia | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biomisc_julia
Posts with mentions or reviews of biomisc_julia.
We have used some of these posts to build our list of alternatives
and similar projects.
-
biomisc_julia:collection of miscellaneous command line bioinformatic scripts written in Julia
biomisc_julia:collection of miscellaneous command line bioinformatic scripts written in Julia . It includes general fasta and pdb file hadling, plots and sequence statistics.
BioSequences.jl
Posts with mentions or reviews of BioSequences.jl.
We have used some of these posts to build our list of alternatives
and similar projects.
- findall in BioSequences.jl and Base
-
Learning which programming language will make me the most accessible in bioinformatics community? (if there's any)
https://github.com/BioJulia/BioSequences.jl/blob/master/src/longsequences/longsequence.jl#L10
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N-Grams in julia
Yes, you should use the BioSequences.jl package for this - assuming you don't need k-mers longer than 32 bases, or need kmers of anything other than DNA or RNA.
What are some alternatives?
When comparing biomisc_julia and BioSequences.jl you can also consider the following projects:
gazelle - BioTorrents.de’s version of Gazelle
pydna - Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.