ZedBot VS slim4-skeleton

This is the viewer and no exceptions are caught here (nor is it noted in the docblock). The only command for currencies is populate. The controller should catch and resolve the exception so the test of an expected exception happens once, then a test for the caught exception output and/or response code.

You can have the container call in a config folder with a file called dependencies or how ever you want. A few existing examples of this is here - Slim calls this app/dependencies in this skeleton project and Odan's Skeleton has this as config/container in their project.

Yes, as an example, the First Application's business logic (not that it's much) doesn't tie itself to the framework, as one example. Odan's Slim Skeleton, ADR Example (yes, I know you are the author), and the Aura Payload example class can be seen as other examples.

Even just the tests in your first link are very useful to see, such as: https://github.com/odan/slim4-skeleton/blob/master/tests/TestCase/Action/Customer/CustomerCreatorActionTest.php

Another option, to me and speaking to the OP as an alternative, it is simpler to add some Data Mappers/Repositories to abstract away the Database code. Good examples is the sample ADR application, Payload library example, Slim 3 First Application, or this Slim 4 Skeleton application

You could also use a Slim Skeleton like Odan's which incorporates much more features to help - docs.

Try Slim again. The setup may be too much, but the concept is the same. Look at the first application or any of the skeleton apps to help (https://github.com/odan/slim4-skeleton for one).