GAAS
Genome Assembly and Annotation Service code (by NBISweden)
PGA
Plastid Genome Annotator (by quxiaojian)
GAAS | PGA | |
---|---|---|
1 | 1 | |
195 | 46 | |
-0.5% | - | |
2.6 | 0.0 | |
5 months ago | over 3 years ago | |
Perl | Perl | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
GAAS
Posts with mentions or reviews of GAAS.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-20.
-
How to download the GTF file for my organism from NCBI? (using featureCounts to obtain gene count data from reads)
In fact someone has done a review of the main conversion tools here.
PGA
Posts with mentions or reviews of PGA.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-03-04.
-
Extracting CDS from fragmented assemblies
The tool PGA was recommended to me for annotation the assemblies, but it will not accept a multifasta as input. I have to "fuse" the contigs somehow for this tool to work, which I've tried to do a couple different ways described below. Once I have assemblies with just a single sequence, I have no problems annotating them and getting the extracted CDS.
What are some alternatives?
When comparing GAAS and PGA you can also consider the following projects:
Utilities - Useful things
Augustus - Genome annotation with AUGUSTUS
learn-anything.xyz - Organize world's knowledge, explore connections and curate learning paths
label-studio - Label Studio is a multi-type data labeling and annotation tool with standardized output format