bio
A lightweight and high-performance bioinformatics package in Golang (by shenwei356)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
BlazeSeq
Posts with mentions or reviews of BlazeSeq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-02-11.
-
A look at the Mojo language for bioinformatics
https://github.com/MoSafi2/MojoFastTrim/tree/restructed/benc...
- MojoFastTrim: Experimental 'FASTQ' parser and quality trimmer written in mojo
bio
Posts with mentions or reviews of bio.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-02-11.
-
A look at the Mojo language for bioinformatics
I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.
I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:
- https://github.com/vertgenlab/gonomics
- https://github.com/biogo/biogo
- https://github.com/shenwei356/bio
... except from there being some really popular bio tools written in Go, like:
- https://github.com/shenwei356/seqkit
What are some alternatives?
When comparing BlazeSeq and bio you can also consider the following projects:
mmtk-julia - Julia binding for MMTk
frackyfrac - A standalone UniFrac calculator.