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Mosdepth Alternatives
Similar projects and alternatives to mosdepth
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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bro
Bro - A super fast stylesheet language for cool kids! Alternative to SassC, DartSass SassJS and Less. (by openpeeps)
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better mosdepth alternative or higher similarity.
mosdepth discussion
mosdepth reviews and mentions
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- Calculating Average Coverage or Read Depth for a Sequence (WES)
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Why is bedtools genomecov giving me a blank output file?
I'm not sure why that happens, but an alternative to bedtools genomecov is mosdepth. Maybe you can try that tool instead as it's very reliable.
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Is there a tool that quantifies “spatial coverage”, that is what percentage of a reference assembly has a read mapped to it?
I would give mosdepth a look. It can provide depth across a chromosome/contig at each base, or a mean depth for a given window size (eg 1kb), or regions provided within a bed file, or a simple summary of the mean depth across each chromosome/contig.
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www.saashub.com | 16 Jun 2024
Stats
Basic mosdepth repo stats
3
667
6.3
2 months ago
brentp/mosdepth is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of mosdepth is Nim.
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