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Linux isn't very pleasant.
> choosing to have vsync enabled or disabled in games
See this thread? https://www.reddit.com/r/swaywm/comments/ntszm9/how_can_i_ma...
I'm not 100% sure what you're asking.
> EDIT: I should another important one for me: xclip, read from and write to the clipboard in the command line
https://github.com/bugaevc/wl-clipboard
plenty others of all sorts.
> auto keyboard/mouse scripting with xdotool
There's a few tools for this: https://github.com/natpen/awesome-wayland#tools
> not have unnecessary mouse/keyboard to monitor delay
There's none that I can notice. Mice cursor are rendered with hardware support
That post is some pretty bad misinformation. An API for global keyboard shortcuts was being worked on and just got merged 2 months ago. https://github.com/flatpak/xdg-desktop-portal/issues/624
There is a way to protect against LD_PRELOAD: use sandboxing. X11 is bad for security because it's an intentional escape around the sandbox.
The "tear it down and build something else argument" is also going nowhere, anything else you build is going to run into the same questions of how to go about implementing these features.