Top 3 Nextstrain Open-Source Projects

ncov

13 1,351 8.4 Python

Nextstrain build for novel coronavirus SARS-CoV-2
covariants

51 314 9.0 Python

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Project mention: At what point do you think things will change? | /r/ZeroCovidCommunity | 2023-12-08

"Publicly available data on the number of analyzed sequences over two-week windows for each country were extracted from covariants.org and Global Initiative on Sharing All Influenza Data (GISAID) initiative databases [3, 4]."

InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
nextclade

2 197 9.8 TypeScript

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Project mention: Why does musl make my Rust code so slow? (2020) | news.ycombinator.com | 2023-12-12

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-12-12.