taxonomy

Open-source projects categorized as taxonomy
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Language: + Python + Ruby + Haskell + Rust + C + R + C# + Go + C++ + Shell + JavaScript + PHP
Topics: Bioinformatics metagenomics Classification Python taxonomic-classification
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Top 23 taxonomy Open-Source Projects

  • crypto-ecosystems

    A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems

    • Project mention: NFT Marketplaces on Stacks | /r/stacks | 2023-05-16

  • MMseqs2

    MMseqs2: ultra fast and sensitive search and clustering suite

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

  • GTDBTk

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  • misp-taxonomies

    Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

  • OnenoteTaggingKit

    OneNote (desktop) add-in to manage OneNote pages by page tags

  • pyani

    Application and Python module for average nucleotide identity analyses of microbes.

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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  • bio

    A lightweight and high-performance bioinformatics package in Golang (by shenwei356)

    • Project mention: A look at the Mojo language for bioinformatics | news.ycombinator.com | 2024-02-11

    I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.

    I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:

    - https://github.com/vertgenlab/gonomics

    - https://github.com/biogo/biogo

    - https://github.com/shenwei356/bio

    ... except from there being some really popular bio tools written in Go, like:

    - https://github.com/shenwei356/seqkit

  • taxonworks

    Workbench for biodiversity informatics.

    • Project mention: The spotted lanternfly is now in Illinois | news.ycombinator.com | 2023-10-03

    For those taxonomists types the taxon in question is here, on a new type of taxon-page. The curators are waiting for official channels (e.g. GBIF, museums) to include vouchers prior to updating the distribution.

    https://hoppers.speciesfile.org/otus/71398/overview

    Shameless plug- Have H3 experience? We'd love to have open-source contributions to facilitate turning those geopolitical fenced maps into H3 format, see https://github.com/SpeciesFileGroup/taxonworks/issues/3581.

  • Metabuli

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    • Project mention: Genomic sequence classification based on k-mers distribution | /r/bioinformatics | 2023-12-04

  • oisru

    Repository for the Open Information Security Risk Universe

  • zeroshot_topics

    Topic Inference with Zeroshot models

  • kraken-biom

    Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

  • wikibonsai

    A jungle gym for thought with an API for the mind.

    • Project mention: WikiBonsai | /r/DigitalGardens | 2023-06-03

  • taxonomy4good

    Taxonomy4Good: a sustainability lexicon that provides the freedom to create custom taxonomies in addition to listed ESG and Sustainability Standards taxonomies.

  • phantasm

    PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

  • vrt-cli

    A simple tool to visualize VRT (Vulnerability Rating Taxonomy) from the CLI.

  • laravel-taxonomies

    A package to bring simple taxonomy relationships to Laravel models

  • glossary

    🖱️ An Aim-community driven taxonomy for a common understanding of aim concepts (by aiming-taxonomy)

  • taxopedia

    Taxonomic trees (cladograms) from Wikipedia-scraped data.

  • TaxonomyTools

    Tools to process and visualize NCBI taxonomy data

  • Taxonomy

    Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources. (by eggzilla)

  • fideslang

    Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2024-02-11.

taxonomy related posts

Index

What are some of the best open-source taxonomy projects? This list will help you:

Project Stars
1 crypto-ecosystems 1,305
2 MMseqs2 1,246
3 dada2 446
4 GTDBTk 426
5 misp-taxonomies 250
6 OnenoteTaggingKit 186
7 pyani 180
8 bio 88
9 taxonworks 81
10 Metabuli 62
11 oisru 61
12 zeroshot_topics 60
13 kraken-biom 43
14 wikibonsai 38
15 taxonomy4good 25
16 phantasm 20
17 vrt-cli 10
18 laravel-taxonomies 8
19 glossary 8
20 taxopedia 7
21 TaxonomyTools 3
22 Taxonomy 2
23 fideslang 0

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