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Top 14 Protein Open-Source Projects
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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Project mention: Rendering protein structures inside cells at the atomic level with Unreal Engine | news.ycombinator.com | 2024-02-29
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Project mention: Large language models generate functional protein sequences across families | news.ycombinator.com | 2023-05-13
I was supposed to be reply to another comment. The GitHub is from 2022:
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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Project mention: [D] To all the machine learning engineers: most difficult model task/type you’ve ever had to work with? | /r/MachineLearning | 2023-07-03
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ProteinStructurePrediction
Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.
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protein_physicochemical_properties_calculator
ProtParam based program that outputs the id, pI, charge and molecular weight of each protein
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rosalind
Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
Protein related posts
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- Large language models generate functional protein sequences across families
- What is a recent scientific discovery that you find exciting?
- Is there a way to achieve a similar COG annotation for Haloferax mediterranei?
- Is there a way to achieve a similar COG annotation for Haloferax mediterranei?
- [R] Large language models generate functional protein sequences across diverse families
- Salesforce/progen: projects and models for protein engineering and design
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A note from our sponsor - WorkOS
workos.com | 18 Apr 2024
Index
What are some of the best open-source Protein projects? This list will help you:
Project | Stars | |
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1 | Biopython | 4,158 |
2 | graphein | 974 |
3 | MolecularNodes | 779 |
4 | progen | 557 |
5 | pyfaidx | 438 |
6 | ribbon | 239 |
7 | awesome-AI-based-protein-design | 180 |
8 | deepblast | 96 |
9 | orfipy | 46 |
10 | reCOGnizer | 24 |
11 | ProteinStructurePrediction | 9 |
12 | protein_physicochemical_properties_calculator | 2 |
13 | MetaBioCargo | 0 |
14 | rosalind | 0 |