Top 7 Phylogenetic Open-Source Projects

Biopython

31 4,158 9.6 Python

Official git repository for Biopython (originally converted from CVS)

Project mention: Invitación a proyecto - Biopython en Español | /r/devsarg | 2023-07-23

ete

1 749 9.6 Python

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
GTDBTk

1 426 4.8 Python

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
PCG

1 28 0.0 Haskell

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
elynx-seq

0 9 6.6 Haskell

Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
taxopedia

4 7 0.0 Python

Taxonomic trees (cladograms) from Wikipedia-scraped data.
ielex-data-and-tree

1 6 10.0 Python

Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-07-23.