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Top 21 Dna Open-Source Projects
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deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Project mention: Look over my purchase, is there anything I should return? | /r/buildapc | 2023-05-06 -
InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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Maybe it would help you to look at the galaxy project: GitHub main site
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Project mention: Looking for an Open Source project to participate in for Google Summer of Code | /r/golang | 2023-12-10
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nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Project mention: Why does musl make my Rust code so slow? (2020) | news.ycombinator.com | 2023-12-12 -
WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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DNAnalyzer
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
P.S. If you haven't checked out my latest project, DNAnalyzer, please do so! It's a groundbreaking open source tool that brings the power of machine learning to DNA analysis. You can find it on GitHub or read more about it here on dev.to. I would love to hear your feedback and suggestions on how to make it better and more useful for everyone.
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Project mention: Python script detects traits in raw human genetic data | news.ycombinator.com | 2023-09-18
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Project mention: A good, fast hash for nucleotides triplet converted to 0, 1, 3, 2 using `3 & (nuc << 1)` | /r/bioinformatics | 2023-04-06
While that works for the canonical bases your method won't support CCN which should give Proline. Hence, for my implementation I have opted for a slower but more general approach. As protein coding sequences are usually short performance isn't an issue, really.
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genetic-origins-heatmap
Use your DNA data (e.g. from 23andMe) to paint a global heatmap of your origins.
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DIF
"DNA IMAGE FOOTPRINT" The main idea is to convert a DNA sequence to an image to find any related sequences in the image with common algorithms (by MahdiKarimian)
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Project mention: dna_parser : A Python package written in Rust to encode DNA sequences for machine learning. | /r/rust | 2023-05-17
I started to work on a Python library written in Rust to encode DNA sequences (stored in the FASTA format) for machine learning applications. I recently released a first version even if the project is in a very early stage and things will be changed/upgraded/improved. dna_parser 0.1 can be easily installed with pip: pip install dna-parser
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rosalind
Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website.
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DMXX-s-Eye-Colour-Project-v.2
Public submissions to DMXX's Eye Colour Project (v.2) at Anthrogenica. Excludes submissions not containing data for every SNP in their panel.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
Dna related posts
- dna_parser : A Python package written in Rust to encode DNA sequences for machine learning.
- Look over my purchase, is there anything I should return?
- A good, fast hash for nucleotides triplet converted to 0, 1, 3, 2 using `3 & (nuc << 1)`
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
- Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
- Unbase - CLI tool for encoding/decoding all the bases
- Operation Bletchley Code Challenge
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A note from our sponsor - WorkOS
workos.com | 28 Mar 2024
Index
What are some of the best open-source Dna projects? This list will help you:
Project | Stars | |
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1 | Biopython | 4,120 |
2 | deepvariant | 3,049 |
3 | galaxy | 1,296 |
4 | vg | 1,050 |
5 | poly | 640 |
6 | pyfaidx | 437 |
7 | nextclade | 194 |
8 | pydna | 149 |
9 | DNAnalyzer | 126 |
10 | hlatyping | 49 |
11 | innit | 45 |
12 | orfipy | 43 |
13 | Genetic-Trait-Detector | 30 |
14 | libdna | 20 |
15 | 13andGene | 4 |
16 | genetic-origins-heatmap | 3 |
17 | DIF | 1 |
18 | evolution | 1 |
19 | dna_parser | 1 |
20 | rosalind | 0 |
21 | DMXX-s-Eye-Colour-Project-v.2 | 0 |