Biopython Alternatives

Similar projects and alternatives to Biopython based on common topics and language
  • GitHub repo orfipy

    Fast and flexible ORF finder

  • GitHub repo galaxy

    Data intensive science for everyone. (by galaxyproject)

  • Scout

    Get performance insights in less than 4 minutes. Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.

  • GitHub repo BioJava

    :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

  • GitHub repo pydna

    Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.

  • GitHub repo dash

    Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

  • GitHub repo Pandas

    Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

  • GitHub repo NumPy

    The fundamental package for scientific computing with Python.

NOTE: The number of mentions on this list indicates mentions on common posts. Hence, a higher number means a better Biopython alternative or higher similarity.

Posts

Posts where Biopython has been mentioned. We have used some of these posts to build our list of alternatives and similar projects.
  • How is computer science used in biotechnology?
    reddit.com/r/biotech | 2021-02-21
    You probably mean genetic engineering, which also uses a lot of software tools. The latest iteration, called synthetic biology, also relies heavily on computer-assisted DNA design, cloning and modelling of gene expression networks. You may check out Biopython, the Synthetic Biology Open Language (SBOL), the GBA software, or CUBA for examples of software used in synbio.

Stats

Basic Biopython repo stats
1
2,619
9.5
5 days ago

biopython/biopython is an open source project licensed under Freely Distributable which is not an OSI approved license.