Pypath Alternatives
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InfluxDB
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pathway
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chatGPT-cheatsheet
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WorkOS
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pypath reviews and mentions
- Recommendations for sites similar to STRING to create functional networks?
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Gene networks as lists?
If you are just looking for edgelists of any kind you can download them from a number of resources, like OmniPath (https://omnipathdb.org/). You can query data a lot of ways, through python, R, read them directly into Cytoscape, or use the webservice (https://github.com/saezlab/pypath/blob/master/webservice.rst) like the following example, where the first two columns contain the source and target nodes:
Stats
saezlab/pypath is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.
The primary programming language of pypath is Python.
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