Pagoda2 Alternatives

Similar projects and alternatives to pagoda2 based on common topics and language

• seurat

  13 2,111 9.7 R pagoda2 VS seurat

  R toolkit for single cell genomics

  

• scanpy

  5 1,736 9.2 Python pagoda2 VS scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  

• SurveyJS

  surveyjs.io sponsored

  Open-Source JSON Form Builder to Create Dynamic Forms Right in Your App. With SurveyJS form UI libraries, you can build and style forms in a fully-integrated drag & drop form builder, render them in your JS app, and store form submission data in any backend, inc. PHP, ASP.NET Core, and Node.js.

  

• kana

  2 3 1.7 JavaScript pagoda2 VS kana

  Single cell analysis in the browser

• alevin-fry

  3 149 7.2 Rust pagoda2 VS alevin-fry

  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

  

• too-many-cells

  0 99 4.5 Haskell pagoda2 VS too-many-cells

  Cluster single cells and analyze cell clade relationships with colorful visualizations.

• salmon

  1 725 5.0 C++ pagoda2 VS salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment (by COMBINE-lab)