classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF (by gpertea)


Basic gffcompare repo stats
8 days ago

gpertea/gffcompare is an open source project licensed under MIT License which is an OSI approved license.


Posts where gffcompare has been mentioned. We have used some of these posts to build our list of alternatives and similar projects - the last one was on 2021-04-08.
  • Advice on how to turn a BLAST output into a GFF/GFT file.
    I'm a little lost on this so I decided to ask here. My output is already at outfmt 6 so it should be ready to be turned into a gff file. I've tried to install and unpack the recommended NCBI link (, but for some reason, linux just doesn't recognise the gffread command. Any ideas?