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Also check out https://github.com/khalidx/runbook (shameless plug). Executable markdown documents that you can run. Great for DevOps and sharing commands with the team.
If you want Markdown instead of Org Mode, Codebraid is great.
https://github.com/gpoore/codebraid
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.
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