I've been really frustrated with picking the right tools for bulk RNA-seq, so I did a long literature review and wrote this workflow

• bulk-rnaseq

  2 32 4.8 Python

  Bulk RNA-seq analysis.

  

• diff-exp

  1 9 5.0 Python

  Differential expression analysis.

  

I actually wrapped DESeq2 after comparing some tools! (https://github.com/latch-verified/diff-exp)

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• rnaseq

  14 770 9.5 Nextflow

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  

Suggest a related project